There would have to be some other problem
like some BOOT manager or you just didnt read the options it
offered you.
if you didnt check the drive partitions before the install then it is possible
that the SATA port options in the bios somehow got changed in such
a way that the disk data got scrambled. This could happen if
swopping between AF and Non AF(advanced format huge sectors) formatted drives.
All windows versions offer a crude menu system to DELETE partitions
and RE-Create them, and format them.
its always obvious what you are doing.
If windows did not offer you the chance to see these partitions then it must have
thought they did not exist.